Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISIKSPKEIKALRKAGELTAQALALLEREVRPGVSLLELDKMAEDFI-KSSHARPAFKGLYGFPNSVCMSLNEVVIHGIPTDYVLQEGDIIGLDLGVEVDGYYGDSALTLPIGAISPQDEKLLACSKESLMHAISSIRVGMHFKELSQILEGAITERGFVPLKGFCGHGIGKKPHEEPEIPNYLEKGVKANSGPKIKEGMVFCLEPMVCQKQGEPKILADKWSVVSVDGLNTSHHEHTIAIVGNKAVILTER
4FO8 Chain:C ((2-250))
-TVTIKTPDDIEKMRIAGRLAAEVLEMIGEHIKPGVTTEELDRICHDYIVNEQKAIPAPLNYKGFPKSICTSINHVVCHGIPNEKPLKEGDILNVDITVIKDGYHGDTSKMFLVGKTPEWADRLCQITQECMYKGISVVRPGAHLGDIGEIIQKHAEKNGFSVVREYCGHGIGKVFHEEPQVLHY----GRAGTGIELKEGMIFTIEPMINQGRPETRLLGDGWTAITKDRKLSAQWEHTVLVTADGYEILTLR
General information:
TITO was launched using:
RESULT:
Template:
4FO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125500 for 2178 contacts (-57.6/contact) +
2D Compatibility (PS) -27377 + (NN) -10841 + (LL) 380
1D Compatibility (HY) -16800 + (ID) 4600
Total energy: -184738.0 ( -84.82 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4FO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FO8-query.scw
PDB file :
Tito_Scwrl_4FO8.pdb
: