Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSIRRGDGLNVVPFIDIMLVLLAIVLSISTFIAQGKIKVSLPNAKNAEKSQPNDQKVVVISVDEHDNIFVDDKPTNL-----EALSAVVK---QTDPKTLIDLKSDKSSRFETFISIMDILKEHNHENFSISTQAQ
2JWK Chain:A ((22-92))
---------------------------------------------------------PVILEVAGIGKYAISIGGERQEGLTEEMVTQLSRQEFDKDNNTLFLVGGAKEVPYEEVIKALNLLHLAGIK---------
General information:
TITO was launched using:
RESULT:
Template:
2JWK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30751 for 372 contacts (-82.7/contact) +
2D Compatibility (PS) -7142 + (NN) -6431 + (LL) 4812
1D Compatibility (HY) -4800 + (ID) 500
Total energy: -44812.0 ( -120.46 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_2JWK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JWK-query.scw
PDB file :
Tito_Scwrl_2JWK.pdb
: