Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPE---HRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSA-ESLSVLDKIKQGDIIESVVFSPSL
2OJU Chain:B ((9-140))
-------------------VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI
General information:
TITO was launched using:
RESULT:
Template:
2OJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62665 for 935 contacts (-67.0/contact) +
2D Compatibility (PS) -13699 + (NN) -6625 + (LL) 1720
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -93519.0 ( -100.02 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_2OJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OJU-query.scw
PDB file :
Tito_Scwrl_2OJU.pdb
: