Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIKDAHFLTSSNNLSQCPASLTSEMVILGRSNVGKSTFINTLLG-KNLAKSSATPGKTRLANFFSTTWEDKENALTTTFNVIDLPGFGYAKVSKSLKKEWEGFLWELLSVRVSIKLFIHLIDARHLDLEIDKNAKENIQALLRPDQAYLSLFTKFDKLNKNEQHRLFLNAPKPFLINTIHFNALSSKYPTLEIVRQTLLKYLLTNPL
1SVW Chain:B ((3-151))
---VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY---------IINDELHFVDVPGYGF------EREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIP---VIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMINR-
General information:
TITO was launched using:
RESULT:
Template:
1SVW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81433 for 1020 contacts (-79.8/contact) +
2D Compatibility (PS) -14401 + (NN) -158 + (LL) 1668
1D Compatibility (HY) -8400 + (ID) 2250
Total energy: -104974.0 ( -102.92 by residue)
QMean score : 0.349
(partial model without unconserved sides chains):
PDB file :
Tito_1SVW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVW-query.scw
PDB file :
Tito_Scwrl_1SVW.pdb
: