Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKLIQFLFIAVVLFLVEYVLINQAAILFLVTSGIIQLCGVIIAIRLLLFDQRNTSSKVAWVAVIFILPVLGTISYLVFGRNPATRKFSTAQVKEKTKLINAIHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTN-GEETFPVLLDALRKAENHIHIQYYIFKTDAISTEIRDILVEKAKSGVEVRFMFDGLGSSK-LGKAFLAPLKEAGVSIHAFDPIASPWIVRTANLRNHRKIVVIDGQIGFTGGLNIGEEYRSNTPDFRVWRDTHIKITG-Q-AVIELQESFLNDWVYMENQAGAADGFISESGSKQYFSPVDMGDEWAQVIYGGPYDKEKWVRDSMLDLIDSAKESVWIVSPYFVPDEESLAVIRRVAMSGVDVRVIIPGKGDRGISFHGSNAYVKTMIEAGAKMYAYADDSFVHAKAMLVDGTRAAIGTANFDVRSFRLNHELMVFLYDESEAMHHLKRDFKKDFEDSRLFTMKDMENKPLLTRIKEVLSSLLSPIL |
| 1BYR Chain:A ((4-150)) | -------------------------------------------------------------------------------------------------------------------------------------SVQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFTAP----DIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSGIPLRTDSNF----------PIQHDKVIIVDNVTVETGSFNFTKAAETKN------SENAVVIWNMPKLAESFLEHWQDRWNQGRD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BYR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91564 for 1189 contacts (-77.0/contact) +
2D Compatibility (PS) -16072 + (NN) -9740 + (LL) 28376
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -96300.0 ( -80.99 by residue)
QMean score : 0.635
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