Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MYKKLATVGMTVLLVGALSACSFNDDKDTSSNNSNNETTSSKSSNNESSSDSLQNKSLDMSYEDAINAFKDKHSDAEISSVELEK-----SLGKYVYKVDGISNDNE----YEMKFNAETKEQLSDETDRLDREDAGGVEKENEKLSLDGIKSPKEAMDKAVSEQAGDVTSWKIERELDTTYYEVTVKQDNNKYEIKLNAKTLEILQTEQDD |
2LYX Chain:A ((19-83)) | ----------------------------------------------------------------AVKEAKKRYPLAQVLFKQKVWDRKRKDEAVKQYHLTLREGSKEFGVFVTISFDPYSQKVNKIAIL----------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2LYX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3951 for 305 contacts (13.0/contact) +
2D Compatibility (PS) -5782 + (NN) -25 + (LL) 7616
1D Compatibility (HY) 400 + (ID) 300
Total energy: 5860.0 ( 19.21 by residue)
QMean score : 0.326
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