Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VITNQRDIDKYYDMLVEKNSNYEGVFFVGVKTTGILCRPTCPAKKPLKENCEFFSTAKEALLASYRPCKRCEPLSNPTKLSPAVKLLVDAIEKNPEKKWTDKDFDDLSISANTARRQFKKQFGMTFIEYARSRRLGLAFKHIRGGNSIINAQLDSGYESGNGFRDAFSKTMGEVPHKSKDITILYSAWLETKLGSMLAISDDDSLLLLEFVDRKGLETEIKKLRMRLNAAITPEKTIIIQQIEAELAQYFNGE--LIDFKTPIRYIGSDFQEN-----VWEELRRIPIGETISYKGLAEKLGRSTASRAVARANGANQLSLIVPCHRVINTNGALGGYGGGLARKEWLIKHEKMVPK |
| 1YFH Chain:B ((59-172)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNYSGGLAVKEWLLAHE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YFH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25567 for 713 contacts (-35.9/contact) +
2D Compatibility (PS) -11847 + (NN) -4793 + (LL) 15648
1D Compatibility (HY) -9200 + (ID) 2200
Total energy: -37959.0 ( -53.24 by residue)
QMean score : 0.430
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