Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEIFEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIGMNFSDATLRNC------VFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDLNKAQFLNCALNGIDLSSCIFESITAMPQDLKGMSIDFSHAPALMPLFGIRVK
2XT2 Chain:A ((5-199))
-----------------------TLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFSLPEAASLLNSLDIELS
General information:
TITO was launched using:
RESULT:
Template:
2XT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -182757 for 1518 contacts (-120.4/contact) +
2D Compatibility (PS) -19731 + (NN) 2027 + (LL) 928
1D Compatibility (HY) -10000 + (ID) 2000
Total energy: -211533.0 ( -139.35 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_2XT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XT2-query.scw
PDB file :
Tito_Scwrl_2XT2.pdb
: