Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSRIDIGEIQAFLYQLRATNEPGRKTIQSIKAAVTKYVGDNSLKGKAVDASKNYYQMTYFPLCDAIIEAMDESEER--LGQYIQDFHAEVDSSPDAKIDADGLYELGKMIDRIESKKEALAQRMNSGTEGQMQNYRSQLAIAYKQ--ENILEKYLS-FEQSHANFF-DHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNSATVSRMQQALNKSRGIKEDIIKELRDYTVLAVVYLDSNGKEQVMWLLERDGVGVENAELKAYLTENGKYLNPEDYTIITNEELNKKINQSWRDGVYYLNG-------NKYDGLTGGVLSTSAYVEAGKGYIDKSGFADVVLGLGLST------AAIRGSLVYKK------VNGPYK----QNIKNRYPNEVQQ-GKIFDYTLEN---GQVKIRDGIK----------------------EVDFIIDLQGNLKVGRGHAHLSNGGDVQAAG-KLKVDSNGNVRRITNESGHYTPTLGQAKNYQQI------FENTGINTKNAWLETYQL--DVTKSGYVDLAKLKRIDSVKLK |
4TR2 Chain:A ((54-627)) | ------DDVHKIISELRFLQKVETILESS------------NMSVSDVEADANAYN----PDRDAPKEELQKLQDKKSLRLIVSENHA---TSPS-------FFEESLL------QEDVVSFIQSKGKLSNLKNLKSMIIDLNSDMTDEELAEYISLLERKGALIESDKLVGADYKFNDEYRNLQ--------------WGLDLARLDETQDLINANR------------VSVTKICVIDS-------------GIDYNHPDLRNNIDVNVKELHGRKGV---DDDSNGVVDDVY--GANFVNNSGDPMDDNYHGTHVSGIIS--AVGNNGIGIVGVDGHSKLVICKALDQHKLGRLGDMFKCIDYCISRQAHMINGSFSFDEYSNIFNASVEHLRSLGILFFVSASNCAHDKLSKPDIAKCDLAVNHRYPPILSKTHNNVIAVANLKRDLDESYSLSVNSFYSNIYCQLAAPGTNIYSTTPMNNYRKLNGTSMASPHVAAIASIVRSINPNLTYLQIVEILRNAIVKLPSLTERVSWGGYVDILRAVNL-AIDSK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4TR2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 31164 for 3425 contacts (9.1/contact) +
2D Compatibility (PS) -42358 + (NN) -1881 + (LL) 5748
1D Compatibility (HY) -14800 + (ID) 4150
Total energy: -26277.0 ( -7.67 by residue)
QMean score : 0.183
|
|
|