Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDEETLLERGYRKYRGADVDIYFNTNVCEHSGNCVKGNVE-LFNLDR-KPWIM-----PDNVSKEEAKRVIHTCPSGALQYIEK
1KQF Chain:B ((125-188))
-------------------IVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGT-
General information:
TITO was launched using:
RESULT:
Template:
1KQF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15884 for 260 contacts (-61.1/contact) +
2D Compatibility (PS) -5711 + (NN) -91 + (LL) 1376
1D Compatibility (HY) -3600 + (ID) 700
Total energy: -24610.0 ( -94.65 by residue)
QMean score : 0.276
(partial model without unconserved sides chains):
PDB file :
Tito_1KQF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KQF-query.scw
PDB file :
Tito_Scwrl_1KQF.pdb
: