Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPTKNHRLPKKHLPIRKSTTRFTKGVVTVSRIDIGEIQTFAYQLHTANEAARKSIKDIKNAVKNYTEDGSLKGKAIDASKNYYQMTYF--PLCDAIIEAMNESEERLAQYIADFHAQVDSSADARIDADGLYELGKMIDRIEAKKEALAQRMNTGTEGQMQSYRSQLSIAYKQENILEKYLAFEQSHGGFFDNLTDLVRG---IQQTIRELQSNIQFNSKTGTYDMSKLNFTTVTRMQNASGKALNDNAKTFNFDEYQKTYRGQ-MWVLMKNGIVDVEATNAYNAAVLGGEMPHESNEAQEEAELLQAVVQSVKEGTDPVTGQEISKAQGFGIISGLIFRYTAGGYKGKKFKIPRDWLHRRKKNNGVEVGTDFGKIGKLVNHPNIKINWSEYAEHGMSRLKQRGLSKSQVDDFVEHGKVLSQNEGEKFAFITEDGVAIVSKDGKLVTAWGKKDFDEGMKKIIGKLYGK----- |
| 4FDT Chain:A ((21-425)) | MQTKIQKYAGTAMPYPNRTDGMTP-------FYINHLGRHGARFPTS----RKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSN-SAKIEAIATY-VPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLN--KSYVNYKEK-GDWLPIYKAFVHKKISPVPIMKKFLLNPEQYLDKEAEEFVMALFSVAAILPDTSIP--LNLEDLFTLDEWHRYWQTQNLRQYMSKS-----------SAPVGKMLPVAIA-----WPLLSEFIRSAQEVISGKSDYQ------------ANFRFAH-----AETVIPFVSLM------GIE-KTDV----QVCRPDSVSVYWKDYEISPMAANVQWLFYRDR-------------DQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 36826 for 3246 contacts (11.3/contact) +
2D Compatibility (PS) -40219 + (NN) -4919 + (LL) 4584
1D Compatibility (HY) -16400 + (ID) 2750
Total energy: -22878.0 ( -7.05 by residue)
QMean score : ?
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