Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LLFDTHVHLNDEAFDDDIEEVIKRAQENDVTRMAVVGFNKETIDRALELAEKYDFISLIVGWHPTDAITFTDEDLEWLRDLALTH--PKVVALGEMGLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEE-VGGIMHCFGETVEVMEACLAMNFYISFGGTVTFKNAKLPKIAAQAIPIDRLLIETDAPYLAPTPNRGKRNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKRLFRIKD
1ZZM Chain:A ((4-259))
RFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQAL-ERRPAKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH--DLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNVP-
General information:
TITO was launched using:
RESULT:
Template:
1ZZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155135 for 2237 contacts (-69.3/contact) +
2D Compatibility (PS) -27692 + (NN) -16295 + (LL) 288
1D Compatibility (HY) -12400 + (ID) 3800
Total energy: -215034.0 ( -96.13 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_1ZZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZZM-query.scw
PDB file :
Tito_Scwrl_1ZZM.pdb
: