Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKS-KFNGMTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRLRQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRP-LKGEVINYVLGDFPKAEQPDIIAAIQKSADAIEDFAQTPFIEVMNKYNQK
4LWR Chain:A ((7-191))
ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQIN--
General information:
TITO was launched using:
RESULT:
Template:
4LWR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119337 for 1554 contacts (-76.8/contact) +
2D Compatibility (PS) -19124 + (NN) -2344 + (LL) 304
1D Compatibility (HY) -12800 + (ID) 3400
Total energy: -156701.0 ( -100.84 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4LWR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWR-query.scw
PDB file :
Tito_Scwrl_4LWR.pdb
: