Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKIYLNELVFYGYHGVLKEETKLGQTFRVSLILGLSTKKAGISDSVEDTVSYADVYETVKEIVEGKPFKLIEALAEKIASEVLTGYPLLEEVTVKLIKPNPPIPGHYDSVAVEIERKRSDLNG
2NM2 Chain:C ((3-119))
-DTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLSEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRE------
General information:
TITO was launched using:
RESULT:
Template:
2NM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77206 for 840 contacts (-91.9/contact) +
2D Compatibility (PS) -12983 + (NN) -8216 + (LL) 96
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -112709.0 ( -134.18 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_2NM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NM2-query.scw
PDB file :
Tito_Scwrl_2NM2.pdb
: