Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4CYU Chain:C ((4-140))
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIA---ANVVE-------------------
General information:
TITO was launched using:
RESULT:
Template:
4CYU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95552 for 1037 contacts (-92.1/contact) +
2D Compatibility (PS) -14553 + (NN) -5774 + (LL) 1392
1D Compatibility (HY) -15200 + (ID) 3300
Total energy: -132987.0 ( -128.24 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_4CYU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CYU-query.scw
PDB file :
Tito_Scwrl_4CYU.pdb
: