Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHKTATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSFEAVLGYLYLAGEMERLQEWMEKALEIVEKGVETN
2GSL Chain:A ((7-130))
---SKDIRDYSGLELAFLGDAIWELEIRKYYLQFGY-NIPTLNKYVKAKVNAKYQSLIYKKII--NDLDEEFKVIGKRAKN--IKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVIKGEL------
General information:
TITO was launched using:
RESULT:
Template:
2GSL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43225 for 897 contacts (-48.2/contact) +
2D Compatibility (PS) -13056 + (NN) -5262 + (LL) 1124
1D Compatibility (HY) -8800 + (ID) 1950
Total energy: -71169.0 ( -79.34 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2GSL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GSL-query.scw
PDB file :
Tito_Scwrl_2GSL.pdb
: