Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGARSSEPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
1YAK Chain:C ((42-249))
-------------WEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAKDLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTEEVRAKMKENFVISSYYEYQFWGMAYRKEGWSDSA---
General information:
TITO was launched using:
RESULT:
Template:
1YAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110449 for 1594 contacts (-69.3/contact) +
2D Compatibility (PS) -22524 + (NN) -9838 + (LL) 1180
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -157631.0 ( -98.89 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_1YAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YAK-query.scw
PDB file :
Tito_Scwrl_1YAK.pdb
: