Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIKNKVIIITGASSGIGKATALLLAEKGAKLVLAARRVEKLEKIVQTIKANSGEAIFAKTDVTKREDNKKLVELAIERYGKVDAIFLNAGIMPNSPLSALKEDEWEQMIDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWAVRDLMEVLRMESAQEGTNIRTVTIYPAAINTELLETITDKETEQGMTSLYKQYGITPDRIASIVAYAIDQPEDVNVNEFTVGPTSQPW
3TFO Chain:B ((3-239))
---MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLR----QESTNIRVTCVNPGVV-----------------------IALQPADIARAVRQVIEAPQSVDTTEITIRPTA---
General information:
TITO was launched using:
RESULT:
Template:
3TFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -149915 for 1828 contacts (-82.0/contact) +
2D Compatibility (PS) -23804 + (NN) -11077 + (LL) 2748
1D Compatibility (HY) -16400 + (ID) 4950
Total energy: -203398.0 ( -111.27 by residue)
QMean score : 0.719
(partial model without unconserved sides chains):
PDB file :
Tito_3TFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TFO-query.scw
PDB file :
Tito_Scwrl_3TFO.pdb
: