Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFE-KANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
4H3D Chain:C ((7-256))
--KVQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAK---APGQISFKELNSVLNLLHKS-
General information:
TITO was launched using:
RESULT:
Template:
4H3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135093 for 2077 contacts (-65.0/contact) +
2D Compatibility (PS) -27131 + (NN) -13265 + (LL) 440
1D Compatibility (HY) -29600 + (ID) 7200
Total energy: -211849.0 ( -102.00 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4H3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3D-query.scw
PDB file :
Tito_Scwrl_4H3D.pdb
: