Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVEVEQIAY
4X9S Chain:A ((9-243))
LELLPAVDVRDGQAVRLVHGVSGSETSYGS-PLEAALAWQASGAEWLHLVDLDAAF-GTGDNRALVAEITGAMDIKVELSGGIRDDASLAAALATGCTRVNLGTAALETPEWAAKAIAEHGDRIAVGLDVRGTTLKGRGWTSEGGDLYETLA-RLDSEGCARYVVTDIGKDGTLTGPNLELLKNVCAATDRPVVASGGISSLEDLRALAALVPQGVEGAIVGKALYAKAFTLEEALKV-----
General information:
TITO was launched using:
RESULT:
Template:
4X9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141121 for 2041 contacts (-69.1/contact) +
2D Compatibility (PS) -25774 + (NN) -12517 + (LL) 756
1D Compatibility (HY) -16000 + (ID) 4500
Total energy: -199156.0 ( -97.58 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_4X9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4X9S-query.scw
PDB file :
Tito_Scwrl_4X9S.pdb
: