Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MLE-GEIPEKYRSVDEEEINRSFGGSLPAVHAVVKSYLQIIW---------------VTKWTE
2VQC Chain:A ((4-73))
TLNSYKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECEVQYKNRKTTFKWIK
General information:
TITO was launched using:
RESULT:
Template:
2VQC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 13399 for 239 contacts (56.1/contact) +
2D Compatibility (PS) -4589 + (NN) 2056 + (LL) 0
1D Compatibility (HY) 4000 + (ID) 0
Total energy: 14866.0 ( 62.20 by residue)
QMean score : -0.064
(partial model without unconserved sides chains):
PDB file :
Tito_2VQC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQC-query.scw
PDB file :
Tito_Scwrl_2VQC.pdb
: