Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLT--LSDLSDQNVVVDAYGVSPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLRSHQAEFSWTYISPSAMFEPGERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNERFTVAGK
4JGB Chain:B ((6-212))
LKIALFGATGMIGSRIAAEAARRGHQVTALSRNP-------ANVQAKAADLFDPASIAAALAGQDVVASAYGPKQEEASKVVAVAKALVDGARKAGVKRVVVVGGAGTLEV-APGKQLVDTEGFPDA-YKAVALAHRDAYGYLSTVQ-DLDWTFFSPAALIAPGERTGRFRTGAGRLIVDEQGNSKISAEDYAIAFVDEIEQGRFIRQAATAA--
General information:
TITO was launched using:
RESULT:
Template:
4JGB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82575 for 1705 contacts (-48.4/contact) +
2D Compatibility (PS) -21761 + (NN) -11047 + (LL) 184
1D Compatibility (HY) -11200 + (ID) 4050
Total energy: -130449.0 ( -76.51 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4JGB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JGB-query.scw
PDB file :
Tito_Scwrl_4JGB.pdb
: