Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGDYIDPSLITKFEKETGIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDHSKLPNEKYLDPRFMDL--SFDDDNKYSMPYFWGTLGIIYNKE-----MFPDKNFDTWNALFDPE----LKNQ-ILLIDGAREVMGLGLNSLGYSLNDTNK-AHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEA------AEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVDGAHKFINFMLKPENAAINAEYVGYATPNAKAVELLPKEISSDERFYPDMD---ELNNLEVYDNLGKRMLSYYNELFLEFKMYRK |
1A99 Chain:D ((3-326)) | ---------------------------------QKTLHIYNWSDYIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPGIYPPADVRAKLFTLKVQD---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1A99.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -102868 for 2445 contacts (-42.1/contact) +
2D Compatibility (PS) -33103 + (NN) -18359 + (LL) 5584
1D Compatibility (HY) -19600 + (ID) 5700
Total energy: -174046.0 ( -71.18 by residue)
QMean score : 0.497
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