Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKSVSSKAMPNMTLRLQ
1UD2 Chain:A ((80-98))
----KAQLERAIGSLKSNDINVY-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1UD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2379 for 70 contacts (-34.0/contact) +
2D Compatibility (PS) -2015 + (NN) -483 + (LL) 1740
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -4637.0 ( -66.24 by residue)
QMean score : 1.026
(partial model without unconserved sides chains):
PDB file :
Tito_1UD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UD2-query.scw
PDB file :
Tito_Scwrl_1UD2.pdb
: