Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGVVIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSAMDLESGLEKLKQELGE
3ZTB Chain:B ((6-116))
---PILKVDDYWVVAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDSFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALNLQKGLDKLKN----
General information:
TITO was launched using:
RESULT:
Template:
3ZTB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123642 for 814 contacts (-151.9/contact) +
2D Compatibility (PS) -12099 + (NN) -5665 + (LL) 436
1D Compatibility (HY) -16400 + (ID) 2200
Total energy: -159570.0 ( -196.03 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_3ZTB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZTB-query.scw
PDB file :
Tito_Scwrl_3ZTB.pdb
: