Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
2QIO Chain:C ((4-256))
----LQGKTFVVMGVANQRSIAWGIARSLHNAGAKLIFTYAGERLERNVRELADTLE--GQESLVLPCDVTNDEELTACFETIKQEVGTIHGVAHCIAFANRDDLKGEFVDTSRDGFLLAQNISAFSLTAVAREAK--KVMTEGGNILTLTYLGGERVVKNYNVMGVAKASLEASVKYLANDLGQHGIRVNAISAGPIRTLSAKGVGDFNSILREIEERAPLRRTTTQEEVGDTAVFLFSDLARGVTGENIHVDSGYHILG-
General information:
TITO was launched using:
RESULT:
Template:
2QIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -192300 for 2197 contacts (-87.5/contact) +
2D Compatibility (PS) -27595 + (NN) -7539 + (LL) 924
1D Compatibility (HY) -28400 + (ID) 8100
Total energy: -263010.0 ( -119.71 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_2QIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QIO-query.scw
PDB file :
Tito_Scwrl_2QIO.pdb
: