Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTETRTEKKKKTTSTFTKVMKIASVALLGIIFFSITGLAAKYYITVQNTFSKINVPLESSNKTLSDLEKKKPFSVLLMGSDARAGEKNGRADTIILATANKQQNAVEM-VSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEK-LMPGVPVDYFISINMEGFKDLVDAVGGITVYNDIDLTEVNSKFV--------KGNITLNGTEALQYVRIRHEDPRGDFGRQDRQ-RDVIIGIANKVISSSG-VSNFESIMKAVGDNFQT-NMTLTDITSMAANYSSVLKNVDSQELKGEGEMIYSESYGFDLYYFAPDKTDLERIITMFKKSLDITE |
3MEJ Chain:A ((7-279)) | -------------------------------------------------HVSLARGEQSVKRIKEFDPGKDSFSVLLLGID------QARSDANVLVTFNRKEKTA-KMLSIPRDAYVNIPGHGYDKFTHAHAYGGVDLTVKTVEEML--DIPVDYVVESNFTAFEDVVNELNGVKVTVKSDKVIQQIKKDTKGKVVLQKGTHTLDGEEALAYVRTR----KSDLLRGQRQME-VLSAIIDKSKSLDTMGQNL------------KMNLSLKDAIGLFPFITS-LKSVESIQLTGYDYEPA------GVYYFKLNQQKLQEVKKELQNDLGVL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MEJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -72008 for 1800 contacts (-40.0/contact) +
2D Compatibility (PS) -25171 + (NN) -3519 + (LL) 6204
1D Compatibility (HY) -10400 + (ID) 3800
Total energy: -108694.0 ( -60.39 by residue)
QMean score : 0.377
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