Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKITTASHGGNYNELAKQHGLTKEMVLDFSANINPLGVPASLKQTITANLDKLVEYPEPDYLALRARIASFHQLDLANVIPGNGATELIFGIAKVTKAQKVLLLAPTFAEYE--RAFFDAEIVYAELTKETNFAAVEIVLEILERDTEIEAVCLCNPNNPTGQLIAQQEMIKIADLCEKRNIYLIIDEAFMDFLEENETISMINNLERFPHVAIIRAFTKFFAIPGLRLGYLLTKNDLLAEALMQMREPWSINTFADLAGQMLLEDEAYIRQTFDWINEERDFLYRGLSRFSALT-VYRPTVNYIFFHLE--KPLDLRKELLLKGIFIRSCANYRGLTENYYRVAVKSRADNSQLLTALEVIFSGN |
| 3FTB Chain:D ((28-355)) | -------------------------LLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIE--LSISLFEKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKI----DDVDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKK-TIIIDEAFIEFTGDPSS-SFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAKQNPWNINCFAEMAAINCLKDTNYIEESLLWIKKERKRFIEELNKIGFIKRVFSPHANFVLCRLENISGEKLYDSLLKEDIVIRRCCNFIGLDDSFVRFAIKDEKKNTKFLRALK------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FTB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220562 for 2679 contacts (-82.3/contact) +
2D Compatibility (PS) -34744 + (NN) -17259 + (LL) 2388
1D Compatibility (HY) -34400 + (ID) 5550
Total energy: -310127.0 ( -115.76 by residue)
QMean score : 0.537
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