Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3OIO Chain:A ((5-109))
-----------------------------------------------------------------------------SQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQTSKSIVQIGLACGFSSGPHFSSTYRNHFNITPREERAQR-
General information:
TITO was launched using:
RESULT:
Template:
3OIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56577 for 750 contacts (-75.4/contact) +
2D Compatibility (PS) -11054 + (NN) -4230 + (LL) 4700
1D Compatibility (HY) -4000 + (ID) 1250
Total energy: -72411.0 ( -96.55 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_3OIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OIO-query.scw
PDB file :
Tito_Scwrl_3OIO.pdb
: