Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNPTKEEIQHILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGYKIIPVNPNADEILGEKTVKHLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQLGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD
3Q9U Chain:B ((9-86))
----TDEGIRETLTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPNYEEVLGRKCYPSVLDIPDKIEVVDLF---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3Q9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30750 for 483 contacts (-63.7/contact) +
2D Compatibility (PS) -7969 + (NN) -2945 + (LL) 4948
1D Compatibility (HY) -7200 + (ID) 1450
Total energy: -45366.0 ( -93.93 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9U-query.scw
PDB file :
Tito_Scwrl_3Q9U.pdb
: