Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLEQVEAIVAPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITIT-D--KTRKITCEIPKDKVAKARLAIQF
1YCY Chain:A ((8-67))
----------------------------------------------------------------------------------------EKVLKEWKGHKVAVSVG--------FTGTLEDFDEEVILLKDVVDVIGNRGKQMLIGLEDINWI------
General information:
TITO was launched using:
RESULT:
Template:
1YCY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11042 for 287 contacts (-38.5/contact) +
2D Compatibility (PS) -5615 + (NN) -2528 + (LL) 7472
1D Compatibility (HY) -800 + (ID) 500
Total energy: -13013.0 ( -45.34 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1YCY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCY-query.scw
PDB file :
Tito_Scwrl_1YCY.pdb
: