Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNKKI-------PLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPGRGFYIVKSVEACEKAKKKNAIFHQLKMPEQESFYDELIAYVK----SLEEPTNG
2JNA Chain:A ((1-103))
MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVSQSGGQISSPSDLREKLS--ELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATKLEHHHHH
General information:
TITO was launched using:
RESULT:
Template:
2JNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1652 for 483 contacts (-3.4/contact) +
2D Compatibility (PS) -9470 + (NN) -1020 + (LL) 200
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -13942.0 ( -28.87 by residue)
QMean score : 0.060
(partial model without unconserved sides chains):
PDB file :
Tito_2JNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JNA-query.scw
PDB file :
Tito_Scwrl_2JNA.pdb
: