Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKSNTFLLITILVGLVFISFGCSEEKETPKKTAKEVQGVQIKTKEFQRVVGWLSKD-SVLLQTKKSG--VTYFEELNIYNEKKRPIFNTKESISEVQISPDYRNILLYSAESA------------EKATMRIIALNDGSTVA--SRAT---KPLTTTFYWNDESPEKIMFVTYSPEWNFQIENWDYTLD------QLDKIDVA---SPFI-SWYGDNLVISNNKDKPDDELGNLYLQDIRDSATKNLIVANIMQFAVHDNVLLTIEKNSDEKLLYDFRTLGFQNFFSYNAAREYDELGTFVPYFDTNFDKNTFLTFVPYKSAKIGSGAKEYKLVKIDPTNKKESTILEL--MDNQPILSYETGDLVLYGYL------FDKVIDTKTGKMYNLINTPTKSF |
2XDW Chain:A ((127-419)) | -----------------------------------------------LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRH-SPNYRLINIDFTDPEE-SKW-----------------------KVLV--PEH---EKDV---------LE-----WVACVRSNFLVLCYLH--------DVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEP--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2XDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25519 for 1882 contacts (-13.6/contact) +
2D Compatibility (PS) -27823 + (NN) -9314 + (LL) 7552
1D Compatibility (HY) -8800 + (ID) 1250
Total energy: -65154.0 ( -34.62 by residue)
QMean score : 0.297
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