Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VATKKKTFEEAIAELETIVEALEN----GSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEEIPFEADGE
1QSD Chain:A ((21-82))
-----GYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT------------
General information:
TITO was launched using:
RESULT:
Template:
1QSD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2301 for 266 contacts (-8.7/contact) +
2D Compatibility (PS) -6727 + (NN) -5203 + (LL) 996
1D Compatibility (HY) -3200 + (ID) 300
Total energy: -16735.0 ( -62.91 by residue)
QMean score : 0.721
(partial model without unconserved sides chains):
PDB file :
Tito_1QSD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QSD-query.scw
PDB file :
Tito_Scwrl_1QSD.pdb
: