Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNNVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIEILQNNGITDFTHLSFVELDLSK----DEGWKEAMLDCEYVLSVASPVFFGKFKNEEELISPAIEGITRILQAAKEA---KVKRVVMTSNFGAIGFSNADKN--SIT------TEAYWTDELAKGLSAYEKSKLIAEKEAWKFME---NETELEFATINPVAIFGPSQSN-----HVSGSFDLLKNLLNGSMK-RVINIPLNVVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVDKMPKKTLPNAAIRAAALFSKHAKEGELMINMNRQISNSKARDVLGWKPISTKEEAVLAAVDSLAKYGLLD |
| 4PVD Chain:B ((2-291)) | ---SVFVSGANGFIAQHIVDLLLKEDYKVIGSARSQEKAENLTEAFGNNPKFSME----VVPDISKLDAFDHVFQKHGKDIKIVLHTASPFCFDITDSERDLLIPAVNGVKGILHSIKKYAADSVERVVLTSSYAAV-FDMAKENDKSLTFNEESWNPATWESCQSDPVNAYCGSKKFAEKAAWEFLEENRDSVKFELTAVNPVYVFGPQMFDKDVKKHLNTSCELVNSLMHLSPEDKIPELFGGYIDVRDVAKAHLVAFQKRETIGQRLIVS-EARFTMQDVLDILNEDFPVLKGNIP------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PVD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -126026 for 2129 contacts (-59.2/contact) +
2D Compatibility (PS) -29196 + (NN) -12421 + (LL) 5680
1D Compatibility (HY) -20800 + (ID) 4600
Total energy: -187363.0 ( -88.01 by residue)
QMean score : 0.518
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