Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKRQSNNRRIKQNLVEGSRSQQNTKRKKTNLVLNVLIIVVSLLIIGSLYFVLFKTESDPAQQENKTASSTAKKEDAAKSSEKKKDSSDDKTTETTESDDPNVAKVITKDWKPIGTEQTGDHVNSYSSTSVDWQEKRKAFSVATDIPVSNTSLWFVEQGADPATQAIGTLSTKENPDK-----AYRVYITW----VDGEGWQPTKVEELKTNDKR |
| 3TN4 Chain:B ((227-282)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------YLLEHGADPKKIVIGHMCDNTDPDYHRKTLAYGVYIAFDRFGIQGMVGAPTDEERVRT---- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3TN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -864 for 225 contacts (-3.8/contact) +
2D Compatibility (PS) -4728 + (NN) 260 + (LL) 8892
1D Compatibility (HY) 2400 + (ID) 50
Total energy: 5910.0 ( 26.27 by residue)
QMean score : -0.079
|
|
|