Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNTKGKKITIIISIIILILVIATFSGYYYVKSQLEPKDEASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYNNDTNLKAGNYELSPAMNTDQIVKKMQEGKTVAPAKLVIPEGYTLDQIADRIVAYQPKLKKADVLKTMDDPEFVASMIKAYPETVTNDVLNKSIKHPLEGYLYPATYTFKGTDVSAEQIITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENVDRKMIASVFYNRLAKDMRLQTDPTVLYALGEHKSKTTYKDLEVDSPYNTYKNNGLPPGPISNSGDSSMEAALYPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN |
1DEA Chain:A ((1-266)) | ------MRLIPLTTAEQVGKWAAR-----HIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEY---VGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNG-NAPDIDAECRQYEEKIRSYGKI------HLFMGGVGN------------------DGHI---AFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLD---------------------------AEEVMILVLGSQKALALQAAVE-------------------GCVNHMWTISCLQLHPKAIMVC-DEPSTMELKVKTLRYFNELEAENIKGL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DEA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -41343 for 2272 contacts (-18.2/contact) +
2D Compatibility (PS) -27917 + (NN) -3162 + (LL) 3704
1D Compatibility (HY) -6400 + (ID) 1400
Total energy: -76518.0 ( -33.68 by residue)
QMean score : 0.252
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