Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------MAEEHNHNHEEENIIWITNEEGKEEAYEILFDFDSEDFDKSY----VLYFPAGKGEDEEIEILAS--SYIQDEEGKQGQLKPVETDEEWDMIEEILATFLADEDEE
1YCS Chain:B ((37-165))
PLALLLDSSLEGEFDLVQRIIYEVD--DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM
General information:
TITO was launched using:
RESULT:
Template:
1YCS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 34987 for 711 contacts (49.2/contact) +
2D Compatibility (PS) -10507 + (NN) -6770 + (LL) 352
1D Compatibility (HY) -1200 + (ID) 550
Total energy: 16312.0 ( 22.94 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_1YCS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YCS-query.scw
PDB file :
Tito_Scwrl_1YCS.pdb
: