Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKVLTFENISYWYKTKDESI--LNDINYDFEAGVFYTVVGSSGSGKTTFLSLAGGLDTQKEGDIYY---KGSSLKSIGLQQFRNKYVSIVFQSYNLLTYMTALQNVTTAMEITH---VNQPDKKAFALSMLEKVGITEEMARQKVLTLSGGQQQRVSIARALCCETELIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAKVSDVKLTLKNGSFVEKKQSMNSLINS
3TIF Chain:B ((1-229))
---MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE-VEREEKL------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129009 for 1811 contacts (-71.2/contact) +
2D Compatibility (PS) -24295 + (NN) -7156 + (LL) 620
1D Compatibility (HY) -21200 + (ID) 4000
Total energy: -185040.0 ( -102.18 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: