Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLRNLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQMVDLINQLRP--DYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLLEKEDIEPPKLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDPVAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK
4V02 Chain:B ((2-246))
-AEVIVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAAIGLRNLDMILGLENRIVYDILDVLEGRVPYEKALVKDKRGLSL-WLLPA-------VIDIEKWNKTVEEIKNSGNYDYILVDSPAGIEKGFQIAVSPADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKRGAMLSVEDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRLMGESIPL---------------------
General information:
TITO was launched using:
RESULT:
Template:
4V02.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163337 for 2030 contacts (-80.5/contact) +
2D Compatibility (PS) -25598 + (NN) -8528 + (LL) 2340
1D Compatibility (HY) -26000 + (ID) 6100
Total energy: -227223.0 ( -111.93 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_4V02.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4V02-query.scw
PDB file :
Tito_Scwrl_4V02.pdb
: