Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTMYAKNNTSGKDMLSLLEWNKEELTDIIKLAVAMKTNPAHYSHILSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSEYIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGIKLAYIGDGNNVCHSLLLAGAMVGIDIRLAMPKGYEVDETILAKAENLAKQSGGKIFVTEDSKLAVTDADFIYTDVWTSMGQEDENAKRLADFGEKYQVNAELVSGAKPDYHFLHCLPAHREEEVTTEIIDGIHSVIYQQAGNRLHAQKALLAAILEAK
4NF2 Chain:B ((36-334))-----------KDLLTLEELTQEEIISLIEFAIYLKKNKQ--EPLLQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKY--TLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFK--


General information:
TITO was launched using:
RESULT:

Template: 4NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -220784 for 2625 contacts (-84.1/contact) +
2D Compatibility (PS) -32909 + (NN) -17503 + (LL) 1124
1D Compatibility (HY) -35200 + (ID) 9100
Total energy: -314372.0 ( -119.76 by residue)
QMean score : 0.564

(partial model without unconserved sides chains):
PDB file : Tito_4NF2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NF2-query.scw
PDB file : Tito_Scwrl_4NF2.pdb: