Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIYFDNSATTKPNAAVLETYTKVAS--NYFANPSSL-HRFGAKSKELLDASRKQIAAMMSALPEEIIFTSGGTEGNNLAIKGLVYSYQNRGKHIITSSIEHPSVRVVMEELEQEGFTVKYLPVDKNGVIKLEELKAALTDETILVSIMGVNNEVGSIQPLQEIGEMLSVLENTFFHVDFVQAIGKIPLTLDANSIDLLTFSGHKFHALRGTGILFKRK--NVHLHPEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRK-EALIEIRDYLLTKIAQMSDMTVHTKQSVAAPHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLKAMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK |
3LVJ Chain:B ((24-376)) | -IYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRA-RGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMAL--KDLAVSSGSAC----LEPSYVLRALGLNDELAHSSIRFSL---------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LVJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165420 for 3015 contacts (-54.9/contact) +
2D Compatibility (PS) -37852 + (NN) -17366 + (LL) 3492
1D Compatibility (HY) -25200 + (ID) 7350
Total energy: -249696.0 ( -82.82 by residue)
QMean score : 0.533
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