Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METVLKAHKVRKVYGSKGNLFSALGSISLEIQKGSFVGIMGPSGAGKSTLLNVLSSIDKPTSGEIEIGGKQISTMNGKELAVFRRDQLGFIFQDYNLLDTMTVKDNIVLPL----------------ALAHIKQAEIDQRFEIIARQFGIFELRNKYPTEISGGQKQRTAVCRAMITEPTLIFADEPTGALDSKSATNLLEGLSQAKDVRDSTIMMVTHDAFAASYCERIMFIKDGEI-FTEIYRGTSSRKQFFQKVLDVLALLGGGENDVI
3TIF Chain:B ((1-232))
---MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA------------NHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF-------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122928 for 1775 contacts (-69.3/contact) +
2D Compatibility (PS) -23461 + (NN) -12882 + (LL) 3472
1D Compatibility (HY) -18800 + (ID) 4600
Total energy: -179199.0 ( -100.96 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: