Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMYGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
3W00 Chain:B ((8-226))
-KHVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSE-LLQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVK----
General information:
TITO was launched using:
RESULT:
Template:
3W00.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146578 for 1854 contacts (-79.1/contact) +
2D Compatibility (PS) -23515 + (NN) -7546 + (LL) 500
1D Compatibility (HY) -22800 + (ID) 5000
Total energy: -204939.0 ( -110.54 by residue)
QMean score : 0.619
(partial model without unconserved sides chains):
PDB file :
Tito_3W00.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W00-query.scw
PDB file :
Tito_Scwrl_3W00.pdb
: