Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSVAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGSLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKTMVK
3FIJ Chain:D ((3-243))
LKPVIGITG------------------QQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPIFAICRGMQLVNVALGGTLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTSELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPELMFQTDPESEQLFQALVDESKKT---
General information:
TITO was launched using:
RESULT:
Template:
3FIJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103521 for 1954 contacts (-53.0/contact) +
2D Compatibility (PS) -23078 + (NN) -3773 + (LL) 1636
1D Compatibility (HY) -29600 + (ID) 10950
Total energy: -169286.0 ( -86.64 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_3FIJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FIJ-query.scw
PDB file :
Tito_Scwrl_3FIJ.pdb
: