Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKIAFVFPGQGAQKVGMGQDVAAEYPEAKKI--YDDADERLGFSITEIITEGPIELLTKSENAQPALVSTSVAILRALETYGVKADY------VAGHSLGEYSALVAGGFLEASDAIYLVRKRGELMEAAVPNGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLANLNCPGQIVISGTTAGVEKAGEKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAEVKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIGSGKVLAGLIKKINRDVTVLSAGDAESVKSVAATLKGE |
1NM2 Chain:A ((3-288)) | ---LVLVAPGQGAQTPGFLTDWLALPGAADRVAAWSDA---IGLDLAHFGTKADADEIRDTSVAQPLLVAAGILSAAALGT-------GFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAAVTETGMSALLGGDPEVSVAHLERL-----GLTPANVNGAGQIVAAGTMEQLAALNED-KPEGVRKVVPLKVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSNKDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKR-------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NM2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136732 for 2422 contacts (-56.5/contact) +
2D Compatibility (PS) -29008 + (NN) -9648 + (LL) 2684
1D Compatibility (HY) -12800 + (ID) 4550
Total energy: -190054.0 ( -78.47 by residue)
QMean score : 0.541
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