Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
4P81 Chain:C ((3-179))
-QEKAVVLDEQAIRRALTRIAHEIIERNKGVDNCVLVGIKTRGIYLAKRLAERIEQIEGKKVPVGELDITLY----------------KGTDIPVDITDKKVILVDDVLYTGRTVRAAMDALMDLGRPSQIQLAVLVDRGHRELPIRADYVGKNVPTSKSERIVVQLSEVDGQDRVSIYE---
General information:
TITO was launched using:
RESULT:
Template:
4P81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107556 for 1311 contacts (-82.0/contact) +
2D Compatibility (PS) -18106 + (NN) -6390 + (LL) 952
1D Compatibility (HY) -19600 + (ID) 5750
Total energy: -156450.0 ( -119.34 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4P81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4P81-query.scw
PDB file :
Tito_Scwrl_4P81.pdb
: