Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKTFQLVATAASGLEAIVGKEVARLGY---DP-KVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFK---ATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQIWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK-R-MPTWSVYVLTSYELFEE---VYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED |
| 3TMA Chain:A ((19-352)) | --HMWLEATTHPGLEDLLLEELSALYPGEGAEVDARKGRVRIPRAWV--GEEALGLRLAHHLVLFRARLLLSREDPLGALERAALALPWPELEG-AGSFRVEARREGEHPFTSPEVERRVGEALHRAYG------VPVDLKRPAVRVRVDVRGEEAFLGVQLTERPLSRRFPK-AALRGSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLG-------------------------------------PTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARHLPRFFPEVDRILANPPHGL----KEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRALPPGFALRHARVVEQGGVYPRVFVLE----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140047 for 2571 contacts (-54.5/contact) +
2D Compatibility (PS) -34570 + (NN) -13128 + (LL) 3936
1D Compatibility (HY) -12400 + (ID) 3500
Total energy: -199709.0 ( -77.68 by residue)
QMean score : 0.413
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