Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDVFLKALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIATSAFPEEVKEIFQSTYDTGIAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVKFIR----SLEEDLQRRDFTMNAIAMD-EHFALHDPFSGQEAIKNKAIKAVGKASERFHEDALRMMRGVRFLSQLDFQLDSETEKALESQIGLLQHTSVERITVEWLKMIKGPAIRRAMDLLLKVEMETYLPGLKGEKKALTEFGSWDWGKRTTDDAIWLGLVVTVQPNNVNAFLKAWKLPNKTIQLVSKAYQYALKMKETWLAEELYHAGKAVFSLVNELNIIRGKENNQHKLSQAYEALPIHSKKDLAITGADLLKWSGESAGPWVKETLDKLECGVLCNEINNEKNQIKRWLGYHEE |
| 3AQM Chain:B ((16-229)) | --DISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMFGPEIIEVATFRG-----------------NIFGSIEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3AQM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80459 for 1385 contacts (-58.1/contact) +
2D Compatibility (PS) -19727 + (NN) -4699 + (LL) 14968
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -108117.0 ( -78.06 by residue)
QMean score : 0.465
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