Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE
2VT2 Chain:B ((7-213))
------KIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGK---GYNVDYLLSFFRKTLDQDEMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDE--SVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSVLEE
General information:
TITO was launched using:
RESULT:
Template:
2VT2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117828 for 1429 contacts (-82.5/contact) +
2D Compatibility (PS) -21854 + (NN) -5963 + (LL) 732
1D Compatibility (HY) -22800 + (ID) 6750
Total energy: -174463.0 ( -122.09 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_2VT2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT2-query.scw
PDB file :
Tito_Scwrl_2VT2.pdb
: